PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676741100
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family B3
Protein Properties Length: 317aa    MW: 35529.6 Da    PI: 6.5259
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676741100genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B338.12.7e-12231031293
                HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
         B3  12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                + + l +p +f  ++ ++k+ +k +tl++  g+ W++ l+   ++ ++yvl +GWk+ +k+ +L +g  + F++dg+++f+++
  676741100  23 SGDDLEIPVSFN-SC-LPKPLPKYVTLKSIYGKIWKMSLRKfGGNLEKYVLLNGWKRIAKDEDLASGHLLEFEFDGSRCFNFC 103
                556789999997.66.5678999****************555888888***************************99999554 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019368.04E-1711106IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.4E-1412106IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.44812108IPR003340B3 DNA binding domain
CDDcd100178.74E-1212105No hitNo description
SMARTSM010191.2E-1314108IPR003340B3 DNA binding domain
PfamPF023621.9E-1022104IPR003340B3 DNA binding domain
SuperFamilySSF1019361.04E-8179269IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.0E-5179269IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.87185281IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MKQGTPADDF LPKFFSVYVP GISGDDLEIP VSFNSCLPKP LPKYVTLKSI YGKIWKMSLR  60
KFGGNLEKYV LLNGWKRIAK DEDLASGHLL EFEFDGSRCF NFCIYEPLTM CKRLRRSSVQ  120
GDVGETGADD EVLVLSDDDV EVVDVADDND AMVDDDDDVD VVVDAADDAR DDDRHYLDDR  180
NNPFFPVTIL PKRRSQLLIP AKVIKDYGLN FPARITVVDP LVKKFGTLAK GIKTQLNGSV  240
FIKGYGSVLR RNSVTSSDKM ICELKKSGNK NMPSLYVTNQ KKLENKTMAN IVQQIFGRNH  300
HVGLPRSDPS YSNFKAA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006400878.11e-114hypothetical protein EUTSA_v10014488mg
SwissprotQ9LVG15e-92Y5013_ARATH; B3 domain-containing protein At5g60130
TrEMBLV4N9891e-114V4N989_EUTSA; Uncharacterized protein
STRINGscaffold_802655.19e-97(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49471843
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60142.12e-49B3 family protein